Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu2388ABC transporter, nucleotide binding/ATPase protein (nitrate). (264 aa)    
Predicted Functional Partners:
dht
Dihydropyrimidinase.
 
     0.936
Atu2390
ABC transporter, membrane spanning protein.
 
 
 0.930
Atu2389
ABC transporter, membrane spanning protein.
 
 
 0.929
Atu2391
ABC transporter, substrate binding protein (nitrate/sulfonate/taurine/bicarbonate).
 
 
 0.915
amaB
N-carbamoyl-beta-alanine amidohydrolase.
 
     0.862
Atu4597
ABC transporter, membrane spanning protein.
 
 
 0.793
Atu2387
NTP pyrophosphohydrolase, MutT family; Belongs to the Nudix hydrolase family.
       0.788
Atu1048
ABC transporter, membrane spanning protein.
 
 
 0.751
Atu3286
ABC transporter, membrane spanning protein.
 
 
 0.736
nrtB
ABC transporter, membrane spanning protein (nitrate).
 
 
 0.721
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.