Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu2389ABC transporter, membrane spanning protein. (291 aa)    
Predicted Functional Partners:
Atu2391
ABC transporter, substrate binding protein (nitrate/sulfonate/taurine/bicarbonate).
 
 
 0.964
Atu2388
ABC transporter, nucleotide binding/ATPase protein (nitrate).
 
 
 0.929
Atu2390
ABC transporter, membrane spanning protein.
 
    
0.916
dht
Dihydropyrimidinase.
 
     0.824
Atu4596
Conserved hypothetical protein.
 
 
 0.800
Atu4598
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.762
Atu1047
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.658
Atu3287
Thiamine biosynthesis associated protein.
 
 0.657
amaB
N-carbamoyl-beta-alanine amidohydrolase.
 
     0.649
Atu1046
ABC transporter, substrate binding protein.
 
 
 0.624
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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