Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu2390ABC transporter, membrane spanning protein. (290 aa)    
Predicted Functional Partners:
Atu2391
ABC transporter, substrate binding protein (nitrate/sulfonate/taurine/bicarbonate).
 
   0.963
Atu2388
ABC transporter, nucleotide binding/ATPase protein (nitrate).
 
 
 0.930
Atu2389
ABC transporter, membrane spanning protein.
 
    
0.916
dht
Dihydropyrimidinase.
 
     0.842
Atu4596
Conserved hypothetical protein.
 
   0.816
Atu4598
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.794
Atu1047
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.690
Atu0159
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.660
ssuB1
ABC transporter, nucleotide binding/ATPase protein (aliphatic sulfonate); Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 
 0.656
Atu3287
Thiamine biosynthesis associated protein.
   0.640
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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