STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2391ABC transporter, substrate binding protein (nitrate/sulfonate/taurine/bicarbonate). (330 aa)    
Predicted Functional Partners:
Atu2389
ABC transporter, membrane spanning protein.
 
 
 0.964
Atu2390
ABC transporter, membrane spanning protein.
 
   0.963
Atu2388
ABC transporter, nucleotide binding/ATPase protein (nitrate).
 
 
 0.915
dht
Dihydropyrimidinase.
 
    0.832
amaB
N-carbamoyl-beta-alanine amidohydrolase.
 
     0.690
Atu2384
Transcriptional regulator, TetR family.
 
     0.664
Atu4155
ABC transporter, membrane spanning protein (aliphatic sulphonate).
 
 
 0.657
Atu3286
ABC transporter, membrane spanning protein.
 
   0.649
Atu4597
ABC transporter, membrane spanning protein.
 
 
 0.648
Atu1048
ABC transporter, membrane spanning protein.
 
 
 0.585
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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