STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2412ABC transporter, membrane spanning protein (urea/amide); Belongs to the binding-protein-dependent transport system permease family. (392 aa)    
Predicted Functional Partners:
Atu2413
ABC transporter, membrane spanning protein (urea/amide); Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
Atu2411
ABC transporter, nucleotide binding/ATPase protein (urea/amide).
 
 0.997
Atu2410
ABC transporter, nucleotide binding/ATPase protein (urea/amide).
 
 
 0.991
Atu2414
ABC transporter, substrate binding protein (urea/amide).
 
 
 0.989
livH-2
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
  
 0.883
Atu4126
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
  
 0.766
livF
ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid).
 
  
 0.766
livG
ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid).
  
 0.764
Atu1410
ABC transporter, nucleotide binding/ATPase protein.
 
  
 0.723
Atu2425
ABC transporter, nucleotide binding/ATPase protein.
  
 0.707
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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