Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu2418Two component sensor kinase. (1131 aa)    
Predicted Functional Partners:
Atu4047
Two component sensor kinase/response regulator hybrid.
  
 
 0.970
Atu0527
Two component sensor kinase/response regulator hybrid.
  
 
 0.953
Atu1362
Two component sensor kinase.
  
 
 0.911
Atu2332
Two component sensor kinase/response regulator hybrid.
  
 
 0.911
Atu2419
Transcriptional regulator, LuxR family.
 
 
0.909
Atu4805
Two component sensor kinase/response regulator hybrid.
   
 
 0.901
Atu4305
Two component sensor kinase.
  
 
 0.840
Atu0027
Two component sensor kinase.
  
 
 0.828
Atu0784
Conserved hypothetical protein.
  
 
 0.789
Atu1349
Hypothetical protein.
  
 
 0.783
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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