Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Atu2426ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family. (465 aa)    
Predicted Functional Partners:
Atu2425
ABC transporter, nucleotide binding/ATPase protein.
 
 0.999
Atu2424
ABC transporter, nucleotide binding/ATPase protein.
 
 0.997
livH
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.992
livG
ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid).
 
 0.984
Atu1410
ABC transporter, nucleotide binding/ATPase protein.
 
 0.983
livF
ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid).
 
 0.980
Atu4124
ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid).
 
 0.979
Atu4125
ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid).
 
 0.977
Atu2422
ABC transporter, substrate binding protein (amino acid).
 
  
 0.952
Atu1412
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.937
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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