STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2454Iron-chelator utilization protein. (358 aa)    
Predicted Functional Partners:
Atu2577
ABC transporter, nucleotide binding/ATPase protein.
   
   0.885
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.616
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
  
  
 0.601
lguL
Lactoylglutathione lyase.
       0.574
trpE(G)
Anthranilate synthase component I and II.
  
  
 0.547
hmuT
ABC transporter, substrate binding protein (hemin).
 
    0.525
Atu2453
Aromatic compounds dioxygenase.
       0.467
Atu2473
ABC transporter, substrate binding protein.
 
  
 0.466
pabB
Para-aminobenzoate synthase component I.
  
  
 0.461
Atu2457
Conserved hypothetical protein.
  
  
 0.433
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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