STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2473ABC transporter, substrate binding protein. (312 aa)    
Predicted Functional Partners:
Atu2476
ABC transporter, nucleotide binding/ATPase protein.
 
  
 0.992
Atu2474
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.986
Atu2475
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.985
fecB
ABC transporter, membrane spanning protein (iron(III) dicitrate).
 
  
 0.694
fecE-3
ABC transporter, nucleotide binding/ATPase protein (iron (III) dicitrate).
 
  
 0.634
Atu2472
Hypothetical protein.
       0.504
fhuC
ABC transporter, nucleotide binding/ATPase protein (ferrichrome).
 
  
 0.473
Atu2454
Iron-chelator utilization protein.
 
  
 0.466
fbpA3
ABC transporter, membrane spanning protein.
   
  
 0.465
irr
Transcriptional regulator, Fur family; Belongs to the Fur family.
      
 0.451
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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