STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2474ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (342 aa)    
Predicted Functional Partners:
Atu2475
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.998
Atu2476
ABC transporter, nucleotide binding/ATPase protein.
 
  
 0.996
Atu2473
ABC transporter, substrate binding protein.
 
  
 0.989
fecE-3
ABC transporter, nucleotide binding/ATPase protein (iron (III) dicitrate).
 
  
 0.789
fhuC
ABC transporter, nucleotide binding/ATPase protein (ferrichrome).
 
  
 0.739
fecB
ABC transporter, membrane spanning protein (iron(III) dicitrate).
 
  
 0.626
hmuV
ABC transporter, nucleotide binding/ATPase protein (hemin); Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
  
     0.625
fecE-2
ABC transporter, nucleotide binding/ATPase protein (iron).
 
  
 0.621
dps
DNA oxidation protective protein, not DNA-binding; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. It efficiently inhibits hydroxyl radical production by the Fenton reaction. Does not bind DNA.
     
 0.502
flgF
Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.430
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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