STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2475ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (322 aa)    
Predicted Functional Partners:
Atu2474
ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.998
Atu2476
ABC transporter, nucleotide binding/ATPase protein.
  
 0.997
Atu2473
ABC transporter, substrate binding protein.
 
  
 0.985
fecE-3
ABC transporter, nucleotide binding/ATPase protein (iron (III) dicitrate).
  
 0.682
fecC
ABC transporter, membrane spanning protein (iron(III) dicitrate); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.622
fecB
ABC transporter, membrane spanning protein (iron(III) dicitrate).
 
    0.620
fecD
ABC transporter, membrane spanning protein (iron (III) dicitrate); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.597
fhuB
ABC transporter, membrane spanning protein (ferrichrome); Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.565
fhuC
ABC transporter, nucleotide binding/ATPase protein (ferrichrome).
  
 0.535
dps
DNA oxidation protective protein, not DNA-binding; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. It efficiently inhibits hydroxyl radical production by the Fenton reaction. Does not bind DNA.
     
 0.508
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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