STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2485Conserved hypothetical protein. (281 aa)    
Predicted Functional Partners:
cls
Cardiolipin synthase.
 
    0.781
nifS
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
   
   0.671
Atu1630
Phospholipase D family protein.
 
    0.608
Atu1134
Conserved hypothetical protein.
 
  
 0.607
Atu3925
Conserved hypothetical protein.
   
    0.511
lpiA
Protein regulated by acid pH.
  
  
 0.479
Atu1877
OmpA family protein.
  
  
 0.466
cvpA
Colicin V production protein.
  
    0.440
pdxK
Pyridoxamine kinase; Belongs to the pyridoxine kinase family.
       0.404
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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