Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu2504Transcriptional regulator, GntR family. (218 aa)    
Predicted Functional Partners:
dapA-3
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
     0.827
Atu2505
ABC transporter, substrate binding protein (sugar).
 
     0.787
Atu3963
Transcriptional regulator, GntR family.
  
     0.761
Atu3532
Transcriptional regulator, GntR family.
  
     0.760
Atu1419
Transcriptional regulator, GntR family.
  
     0.720
Atu3961
Transcriptional regulator, GntR family.
  
     0.707
Atu4674
Transcriptional regulator, GntR family.
  
     0.698
Atu2507
ABC transporter, membrane spanning protein (sugar).
 
     0.683
Atu3908
Transcriptional regulator, GntR family.
  
     0.664
Atu1405
Transcriptional regulator, GntR family.
  
     0.624
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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