Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Atu2505ABC transporter, substrate binding protein (sugar). (443 aa)    
Predicted Functional Partners:
Atu2506
ABC transporter, membrane spanning protein (sugar).
 
  0.997
Atu2507
ABC transporter, membrane spanning protein (sugar).
 
 
 0.980
Atu2504
Transcriptional regulator, GntR family.
 
     0.787
dapA-3
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
     0.758
Atu3169
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
 
 0.698
Atu4449
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
 
 0.697
Atu3168
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
   0.678
Atu2508
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
  
   0.675
Atu4448
ABC transporter, membrane spanning protein (sorbitol/mannitol).
 
   0.673
Atu3151
ABC transporter, substrate binding protein (sugar).
  
     0.632
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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