STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2507ABC transporter, membrane spanning protein (sugar). (278 aa)    
Predicted Functional Partners:
Atu2506
ABC transporter, membrane spanning protein (sugar).
 
 0.969
Atu2505
ABC transporter, substrate binding protein (sugar).
 
   0.966
Atu2508
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
 
 
 0.838
malF-2
ABC transporter, membrane spanning protein (sugar).
 
 0.808
Atu1403
ABC transporter, membrane spanning protein.
 
 0.789
Atu3150
ABC transporter, membrane spanning protein (sugar).
 
 0.777
Atu3173
ABC transporter, membrane spanning protein (sugar).
 
 0.775
Atu4558
ABC transporter, membrane spanning protein (sugar).
 
 0.753
thuF
ABC transporter, membrane spanning protein (trehalose/maltose).
 
 0.736
dapA-3
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
     0.725
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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