Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu2507ABC transporter, membrane spanning protein (sugar). (278 aa)    
Predicted Functional Partners:
Atu2506
ABC transporter, membrane spanning protein (sugar).
 
 
 0.981
Atu2505
ABC transporter, substrate binding protein (sugar).
 
 
 0.980
Atu2508
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
 
 
 0.841
malF-2
ABC transporter, membrane spanning protein (sugar).
 
 
 0.806
Atu1403
ABC transporter, membrane spanning protein.
 
 
 0.787
Atu3150
ABC transporter, membrane spanning protein (sugar).
 
 
 0.775
Atu3173
ABC transporter, membrane spanning protein (sugar).
 
 
 0.773
Atu4558
ABC transporter, membrane spanning protein (sugar).
 
 
 0.751
dapA-3
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
     0.749
thuF
ABC transporter, membrane spanning protein (trehalose/maltose).
 
 
 0.734
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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