Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu2508ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily. (352 aa)    
Predicted Functional Partners:
Atu3237
ABC transporter, membrane spanning protein (sugar).
 
 0.912
Atu3238
ABC transporter, membrane spanning protein (sugar).
  
  0.908
aglE
ABC transporter, substrate binding protein (alpha-glucoside).
   
 0.869
Atu3239
ABC transporter, substrate binding protein (sugar).
   
 0.867
aglF
ABC transporter, membrane spanning protein.
   
  0.866
Atu3168
ABC transporter, membrane spanning protein (sorbitol/mannitol).
   
  0.866
Atu3169
ABC transporter, membrane spanning protein (sorbitol/mannitol).
  
 0.866
Atu3351
ABC transporter, membrane spanning protein (sugar).
   
  0.866
Atu4448
ABC transporter, membrane spanning protein (sorbitol/mannitol).
   
  0.866
Atu4449
ABC transporter, membrane spanning protein (sorbitol/mannitol).
  
 0.866
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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