STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2513Penicillin binding protein. (503 aa)    
Predicted Functional Partners:
Atu2519
Dipeptidase.
 
    0.617
Atu2512
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.594
dppA
ABC transporter, substrate binding protein (dipeptide).
 
     0.587
Atu3507
Conserved hypothetical protein.
  
     0.528
MdoC
Conserved hypothetical protein.
  
     0.523
Atu4522
Hypothetical protein.
  
     0.522
dppF
ABC transporter, nucleotide binding/ATPase protein (dipeptide).
       0.515
dppD-2
ABC transporter, nucleotide binding/ATPase protein (dipeptide).
       0.515
dppB
ABC transporter, membrane spanning protein (dipeptide).
       0.515
dppC-2
ABC transporter, membrane spanning protein (dipeptide).
       0.507
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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