Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppC-2ABC transporter, membrane spanning protein (dipeptide). (300 aa)    
Predicted Functional Partners:
dppB
ABC transporter, membrane spanning protein (dipeptide).
 
  0.996
dppA
ABC transporter, substrate binding protein (dipeptide).
 
  0.995
dppD-2
ABC transporter, nucleotide binding/ATPase protein (dipeptide).
   0.969
dppF
ABC transporter, nucleotide binding/ATPase protein (dipeptide).
  
 0.948
Atu4434
ABC transporter, nucleotide binding/ATPase protein (oligopeptide).
   0.869
Atu3457
ABC transporter, nucleotide binding/ATPase protein.
   0.859
nikB
ABC transporter, membrane spanning protein.
 
   0.857
Atu3459
ABC transporter, membrane spanning protein.
  
   0.853
Atu4432
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.853
dppB-4
ABC transporter, membrane spanning protein (dipeptide).
  
   0.853
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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