Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dppBABC transporter, membrane spanning protein (dipeptide). (339 aa)    
Predicted Functional Partners:
dppA
ABC transporter, substrate binding protein (dipeptide).
  0.997
dppC-2
ABC transporter, membrane spanning protein (dipeptide).
 
  0.996
dppD-2
ABC transporter, nucleotide binding/ATPase protein (dipeptide).
 
   0.970
dppF
ABC transporter, nucleotide binding/ATPase protein (dipeptide).
 
  
 0.953
Atu3458
ABC transporter, membrane spanning protein.
  
   0.853
Atu4433
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.853
dppC-4
ABC transporter, membrane spanning protein (dipeptide).
  
   0.853
Atu3037
ABC transporter, membrane spanning protein (dipeptide).
  
   0.846
dppC-3
ABC transporter, membrane spanning protein (dipeptide).
  
   0.830
Atu4626
ABC transporter, substrate binding protein (oligopeptide).
  
   0.829
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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