STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stcDN-methylproline demethylase. (678 aa)    
Predicted Functional Partners:
Atu0727
Ferredoxin I.
 
 
 0.893
Atu0726
Ring hydroxylating dioxygenase, alpha-subunit.
 
 
 0.883
Atu2537
Transcriptional regulator, TetR family.
 
  
 0.883
Atu1480
Conserved hypothetical protein.
  
 
 0.840
etfA
Electron transfer flavoprotein alpha subunit.
  
 
 0.781
etfB
Electron transfer flavoprotein beta subunit.
  
 
 0.769
trxA
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.702
Atu3698
Putative thioredoxin.
  
 
 0.702
Atu1196
Naphthalene 1,2-dioxygenase.
  
 
 0.701
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.681
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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