STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2586ABC transporter, nucleotide binding/ATPase protein (oligopeptide); Belongs to the ABC transporter superfamily. (630 aa)    
Predicted Functional Partners:
Atu2589
ABC transporter, membrane spanning protein (oligopeptide).
 
    0.899
Atu2588
ABC transporter, membrane spanning protein (oligopeptide).
 
    0.876
Atu2587
ABC transporter, substrate binding protein (oligopeptide).
 
    0.836
Atu2590
Conserved hypothetical protein.
 
     0.722
redA
Conserved hypothetical protein.
 
     0.580
Atu0750
ABC transporter, membrane spanning protein.
  
 
 0.576
redB
Glucosyltransferase.
 
    0.557
Atu4194
ABC transporter, membrane spanning protein (oligopeptide).
 
    0.460
Atu2585
Conserved hypothetical protein.
       0.443
dppD-4
ABC transporter, nucleotide binding/ATPase protein (dipeptide).
 
   
0.415
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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