Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu2606Transcriptional regulator, GntR family. (250 aa)    
Predicted Functional Partners:
nagA
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.962
glmS-2
Glucosamine--fructose-6-phosphate aminotransferase.
 
  
 0.935
Atu2609
Transcriptional regulator, ROK family.
  
  
 0.884
hutC-2
Transcriptional regulator, GntR family.
  
   
 0.688
Atu2605
Hypothetical protein.
       0.527
pobR
Transcriptional regulator, AraC family.
  
  
 0.522
Atu2604
Oxidoreductase.
 
    0.476
aglR
Transcriptional regulator repressor.
  
   
 0.408
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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