STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
Atu2677Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (159 aa)    
Predicted Functional Partners:
Atu2676
4a-hydroxytetrahydrobiopterin dehydratase.
 
    0.714
cscA
Sucrose hydrolase.
  
 
 0.695
trxA
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.602
Atu3698
Putative thioredoxin.
  
 
 0.602
Atu1491
Sodium bile acid symporter family protein.
  
  
 0.593
Atu2675
Conserved hypothetical protein.
       0.567
bfrA
Exogenous ferric siderophore receptor.
    
 
 0.558
hflC
HFLC protein; HflC and HflK could regulate a protease.
  
    0.550
Atu2287
Outer membrane heme receptor.
    
 
 0.549
Atu1236
Polysaccharide biosynthesis glycosyltransferase.
  
  
 0.539
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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