STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2677Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (159 aa)    
Predicted Functional Partners:
Atu2676
4a-hydroxytetrahydrobiopterin dehydratase.
 
    0.682
trxA
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.594
Atu3698
Putative thioredoxin.
  
 
 0.594
Atu1491
Sodium bile acid symporter family protein.
  
  
 0.550
Atu1236
Polysaccharide biosynthesis glycosyltransferase.
  
  
 0.529
Atu2675
Conserved hypothetical protein.
       0.528
hflC
HFLC protein; HflC and HflK could regulate a protease.
  
    0.515
exoP
Exopolysaccharide production protein.
  
 
 0.496
Atu3556
Exopolysaccharide polymerization/transport protein.
  
 
 0.496
exoP-2
Exopolysaccharide polymerization/transport protein.
  
 
 0.496
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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