Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
prsD1ABC transporter, nucleotide binding/ATPase protein (protein). (577 aa)    
Predicted Functional Partners:
prsE2
HlyD family secretion protein.
 
  
 0.960
prsE2-2
Secretion protein, HlyD family.
 
  
 0.802
rspE
ABC transporter, membrane spanning protein (bacteriocin).
 
  
 0.802
Atu3323
Secretion protein, HlyD family.
 
  
 0.800
Atu2704
Hypothetical protein.
       0.634
Atu1580
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
     
0.598
Atu4533
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
     
0.572
Atu1396
ABC transporter, nucleotide binding/ATPase protein.
 
     
0.562
rzcA
Rhizobiocin.
  
 
 0.554
Atu4283
ABC transporter, nucleotide binding/ATPase protein.
 
     
0.537
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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