Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Atu1700 | ompA | Atu1700 | Atu2722 | Lipoprotein. | Porin. | 0.587 |
Atu1700 | secD | Atu1700 | Atu1562 | Lipoprotein. | Protein-export membrane protein SECD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.441 |
amyA | ompA | Atu3914 | Atu2722 | Alpha-amylase. | Porin. | 0.529 |
gcpE | ompA | Atu2723 | Atu2722 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. | Porin. | 0.645 |
impK | ompA | Atu4333 | Atu2722 | OmpA-like porin. | Porin. | 0.583 |
lpxC | ompA | Atu2085 | Atu2722 | UDP-3-0-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | Porin. | 0.492 |
motB | motB-2 | Atu0569 | Atu3746 | Flagellar motor protein, PAL/OmpA family. | Flagellar motor protein. | 0.911 |
motB | ompA | Atu0569 | Atu2722 | Flagellar motor protein, PAL/OmpA family. | Porin. | 0.595 |
motB-2 | motB | Atu3746 | Atu0569 | Flagellar motor protein. | Flagellar motor protein, PAL/OmpA family. | 0.911 |
motB-2 | ompA | Atu3746 | Atu2722 | Flagellar motor protein. | Porin. | 0.486 |
ompA | Atu1700 | Atu2722 | Atu1700 | Porin. | Lipoprotein. | 0.587 |
ompA | amyA | Atu2722 | Atu3914 | Porin. | Alpha-amylase. | 0.529 |
ompA | gcpE | Atu2722 | Atu2723 | Porin. | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. | 0.645 |
ompA | impK | Atu2722 | Atu4333 | Porin. | OmpA-like porin. | 0.583 |
ompA | lpxC | Atu2722 | Atu2085 | Porin. | UDP-3-0-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.492 |
ompA | motB | Atu2722 | Atu0569 | Porin. | Flagellar motor protein, PAL/OmpA family. | 0.595 |
ompA | motB-2 | Atu2722 | Atu3746 | Porin. | Flagellar motor protein. | 0.486 |
ompA | secD | Atu2722 | Atu1562 | Porin. | Protein-export membrane protein SECD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.484 |
ompA | tolB | Atu2722 | Atu1656 | Porin. | tolB protein; Belongs to the TolB family. | 0.631 |
ompA | tolB-2 | Atu2722 | Atu3714 | Porin. | tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.631 |
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