STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2737Oxidoredutase. (300 aa)    
Predicted Functional Partners:
Atu3232
Hydroxypyruvate reductase.
 
  
 0.921
garR
2-hydroxy-3-oxopropionate reductase.
  
  
 
0.921
Atu0077
D-isomer specific 2-hydroxyacid dehydrogenases family protein.
    
 0.904
Atu3399
2-hydroxyacid dehydrogenase.
    
  0.900
Atu4048
2-hydroxyacid dehydrogenase.
    
  0.900
Atu2738
Nucleoside-diphosphate-sugar epimerase.
       0.804
ilvD-2
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.786
Atu2739
Oxidoreductase.
 
     0.602
garD
D-galactarate dehydratase.
  
  
 0.563
ilvA-2
Threonine dehydratase.
     
 0.540
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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