Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Atu2737 | Atu2738 | Atu2737 | Atu2738 | Oxidoredutase. | Nucleoside-diphosphate-sugar epimerase. | 0.804 |
Atu2737 | ilvD-2 | Atu2737 | Atu2736 | Oxidoredutase. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.786 |
Atu2738 | Atu2737 | Atu2738 | Atu2737 | Nucleoside-diphosphate-sugar epimerase. | Oxidoredutase. | 0.804 |
Atu2738 | Atu2741 | Atu2738 | Atu2741 | Nucleoside-diphosphate-sugar epimerase. | Conserved hypothetical protein. | 0.644 |
Atu2738 | ilvD-2 | Atu2738 | Atu2736 | Nucleoside-diphosphate-sugar epimerase. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.859 |
Atu2738 | rpsC | Atu2738 | Atu1940 | Nucleoside-diphosphate-sugar epimerase. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.643 |
Atu2738 | rpsE | Atu2738 | Atu1929 | Nucleoside-diphosphate-sugar epimerase. | 30s ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.620 |
Atu2738 | rpsH | Atu2738 | Atu1932 | Nucleoside-diphosphate-sugar epimerase. | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.624 |
Atu2738 | rpsL | Atu2738 | Atu1951 | Nucleoside-diphosphate-sugar epimerase. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.641 |
Atu2738 | rpsN | Atu2738 | Atu1933 | Nucleoside-diphosphate-sugar epimerase. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.650 |
Atu2738 | rpsQ | Atu2738 | Atu1937 | Nucleoside-diphosphate-sugar epimerase. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.638 |
Atu2738 | rpsS | Atu2738 | Atu1942 | Nucleoside-diphosphate-sugar epimerase. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.652 |
Atu2741 | Atu2738 | Atu2741 | Atu2738 | Conserved hypothetical protein. | Nucleoside-diphosphate-sugar epimerase. | 0.644 |
Atu2741 | ilvD-2 | Atu2741 | Atu2736 | Conserved hypothetical protein. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.569 |
ilvD-2 | Atu2737 | Atu2736 | Atu2737 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | Oxidoredutase. | 0.786 |
ilvD-2 | Atu2738 | Atu2736 | Atu2738 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | Nucleoside-diphosphate-sugar epimerase. | 0.859 |
ilvD-2 | Atu2741 | Atu2736 | Atu2741 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | Conserved hypothetical protein. | 0.569 |
rpsC | Atu2738 | Atu1940 | Atu2738 | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | Nucleoside-diphosphate-sugar epimerase. | 0.643 |
rpsC | rpsE | Atu1940 | Atu1929 | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 30s ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rpsC | rpsH | Atu1940 | Atu1932 | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
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