Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Atu2746Conserved hypothetical protein. (228 aa)    
Predicted Functional Partners:
rpmI
50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
    0.826
Atu8171
Conserved hypothetical protein.
  
   
 0.787
Atu3758
Conserved hypothetical protein; Belongs to the UPF0335 family.
  
   
 0.770
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.754
Atu0008
Conserved hypothetical protein.
  
     0.746
uvrD
ATP-dependant DNA helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.712
Atu0024
Conserved hypothetical protein.
  
     0.707
Atu3572
Transcriptional regulator, HTH family.
  
     0.701
Atu1327
NADH-ubiquinone oxidoreductase.
  
   
 0.697
Atu0361
Transcriptional regulator.
  
     0.696
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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