STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amtBAmmonium transporter. (401 aa)    
Predicted Functional Partners:
glnK
Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
 
 0.998
glnB
Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
 
 0.996
ntrB
Two component sensor kinase.
  
 
 0.866
gltB
Glutamate synthase large subunit.
 
  
 0.747
gltB-2
Glutamate synthase large subunit.
 
  
 0.742
glnA-3
Glutamine synthetase.
  
  
 0.617
glnA-5
Glutamine synthetase.
  
  
 0.616
glnA
Glutamine synthetase.
  
  
 0.598
glnA-6
Glutamine synthetase III.
  
  
 0.598
gltD
Glutamate synthase, small subunit.
 
  
 0.590
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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