STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2775Conserved hypothetical protein. (465 aa)    
Predicted Functional Partners:
ftsX
Cell division protein.
 
 
 
 0.940
Atu2774
Carboxy-terminal protease; Belongs to the peptidase S41A family.
 
  
 0.920
Atu2773
Conserved hypothetical protein.
 
   
 0.812
Atu1700
Lipoprotein.
 
   
 0.794
Atu2656
Conserved hypothetical protein.
  
     0.699
Atu4178
Conserved hypothetical protein.
 
   
 0.686
celD
Cellulose biosynthesis protein.
   
 
 0.681
Atu4742
Conserved hypothetical protein.
   
 
 0.681
Atu3761
Conserved hypothetical protein.
  
     0.675
amiA
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.629
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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