STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2811Conserved hypothetical protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (400 aa)    
Predicted Functional Partners:
Atu2815
Conserved hypothetical protein.
 
  
 0.984
Atu4466
Oxidoreductase.
  
  
  0.920
Atu2816
Oxidoreductase.
 
    0.725
Atu2812
Conserved hypothetical protein.
 
   
 0.632
Atu2814
Zinc-binding dehydrogenase.
  
  
 0.593
Atu3527
Conserved hypothetical protein.
 
   
 0.588
uxaB
Altronate oxidoreductase.
     
 0.566
gudD
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
   
 0.517
Atu3453
Isomerase/lactonizing enzyme; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.480
fdh
D-threo-aldose 1-dehydrogenase.
 
    0.417
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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