STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2816Oxidoreductase. (337 aa)    
Predicted Functional Partners:
Atu2815
Conserved hypothetical protein.
 
 0.995
Atu3528
Oxidoreductase.
  
  
 
0.909
Atu2812
Conserved hypothetical protein.
 
    0.864
uxaB
Altronate oxidoreductase.
 
     0.824
Atu2814
Zinc-binding dehydrogenase.
 
    0.819
scrK
Fructokinase.
    
  0.803
Atu2811
Conserved hypothetical protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
    0.725
Atu3527
Conserved hypothetical protein.
  
 0.686
rbsB-2
ABC transporter, substrate binding protein (ribose).
 
     0.628
Atu3814
Conserved hypothetical protein.
 
    0.478
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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