STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu2821Transcriptional regulator, GntR family. (230 aa)    
Predicted Functional Partners:
Atu1788
Transcriptional regulator, GntR family.
  
     0.768
Atu3226
Transcriptional regulator, GntR family.
  
     0.767
Atu3532
Transcriptional regulator, GntR family.
  
    0.721
Atu3963
Transcriptional regulator, GntR family.
  
    0.709
Atu4118
Transcriptional regulator, GntR family.
  
    0.708
garD
D-galactarate dehydratase.
     
 0.686
Atu3020
Transcriptional regulator, GntR family.
  
    0.679
Atu1387
Transcriptional regulator, GntR family.
  
    0.668
Atu4702
Transcriptional regulator, GntR family.
  
    0.630
Atu3294
Transcriptional regulator, GntR family.
  
    0.627
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.