STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3020Transcriptional regulator, GntR family. (236 aa)    
Predicted Functional Partners:
Atu0791
Transcriptional regulator, GntR family.
  
     0.764
Atu3961
Transcriptional regulator, GntR family.
  
     0.763
Atu3908
Transcriptional regulator, GntR family.
  
     0.741
Atu3794
Transcriptional regulator, FadR/GntR family.
  
    0.730
Atu3294
Transcriptional regulator, GntR family.
  
     0.725
Atu2740
Transcriptional regulator, GntR family.
  
    0.688
Atu2821
Transcriptional regulator, GntR family.
  
    0.683
Atu4624
Transcriptional regulator, GntR family.
  
    0.680
Atu3021
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
       0.671
Atu3022
ABC transporter, membrane spanning protein (sugar).
       0.671
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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