STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3026Short chain dehydrogenase. (249 aa)    
Predicted Functional Partners:
Atu3025
Oligo alginate lyase.
 
     0.859
Atu3024
ABC transporter, membrane spanning protein (sugar).
 
     0.745
Atu8093
Hypothetical protein.
       0.727
Atu3027
Dehydrogenase.
 
 
   0.677
Atu3028
Conserved hypothetical protein.
  
    0.617
gudD
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.617
Atu3023
ABC transporter, membrane spanning protein (sugar).
 
     0.578
Atu3022
ABC transporter, membrane spanning protein (sugar).
 
     0.541
Atu4574
Dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.524
betC
Choline sulfatase.
   
 
 0.493
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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