STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gudDGlucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (415 aa)    
Predicted Functional Partners:
Atu3140
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.945
gci
Conserved hypothetical protein; Catalyzes the ring opening of D-galactaro-1,4-lactone to yield 5-keto-4-deoxy-D-glucarate (KDG) via a beta-elimination reaction. This is a step in the oxidative degradation pathway of D-galacturonate, which allows A.tumefaciens to utilize D-galacturonate as a sole carbon source. To a lesser extent, can also use D-glucaro-1,4-lactone as substrate to produce KDG, but cannot use D-galactaro-1,5-lactone, D- glucaro-6,3-lactone and linear D-glucarate.
  
  
0.928
garD
D-galactarate dehydratase.
 
 
 0.926
Atu3401
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.900
Atu3950
Aldehyde dehydrogenase.
     
  0.900
Atu4153
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.900
Atu4849
NADP-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.900
Atu3027
Dehydrogenase.
 
     0.821
Atu3028
Conserved hypothetical protein.
 
     0.809
Atu1014
Aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.790
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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