Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3034Transcriptional regulator, ROK family. (182 aa)    
Predicted Functional Partners:
Atu4576
Transcriptional regulator, ROK family.
 
     0.748
Atu4207
Transcriptional regulator, ROK family.
  
    0.746
Atu3240
Transcriptional regulator, ROK family.
  
    0.726
Atu3033
Hypothetical protein.
       0.718
Atu2609
Transcriptional regulator, ROK family.
  
     0.696
Atu4567
Transcriptional regulator, ROK family.
 
     0.683
Atu3577
Transcriptional regulator.
 
     0.667
Atu3032
Hypothetical protein.
       0.543
frcR
Transcriptional regulator, ROK family.
 
     0.462
Atu3031
Conserved hypothetical protein.
       0.450
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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