Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3035Two component response regulator. (747 aa)    
Predicted Functional Partners:
Atu3041
ABC transporter, substrate binding protein (dipeptide).
 
     0.766
Atu4034
Two component sensor kinase.
 
 
 0.753
Atu3040
Conserved hypothetical protein.
 
     0.705
Atu4354
Hypothetical protein.
  
     0.700
Atu0480
Polysaccharide biosynthesis protein.
  
    0.695
exoH
Succinoglycan biosynthesis protein.
  
     0.690
Atu3549
Conserved hypothetical protein.
  
     0.668
Atu3553
Hypothetical protein.
  
  
 0.650
Atu3036
ABC transporter, membrane spanning protein (dipeptide).
 
     0.647
Atu4047
Two component sensor kinase/response regulator hybrid.
  
 
 0.647
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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