STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3040Conserved hypothetical protein. (377 aa)    
Predicted Functional Partners:
Atu3039
Hydantoinase beta subunit-like protein.
    0.994
Atu3043
Hydantoinase beta subunit-like protein.
    0.986
Atu3041
ABC transporter, substrate binding protein (dipeptide).
 
     0.839
Atu3036
ABC transporter, membrane spanning protein (dipeptide).
 
     0.825
Atu3037
ABC transporter, membrane spanning protein (dipeptide).
 
     0.813
Atu3038
ABC transporter, nucleotide binding/ATPase protein (dipeptide); Belongs to the ABC transporter superfamily.
 
     0.763
Atu3035
Two component response regulator.
 
     0.698
Atu3042
Conserved hypothetical protein.
 
    
0.498
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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