STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3046Oxidoreductase. (441 aa)    
Predicted Functional Partners:
Atu3047
ABC transporter, membrane spanning protein (oligopeptide).
 
    0.833
Atu3052
Transcriptional regulator, MarR family.
 
     0.780
Atu3048
ABC transporter, membrane spanning protein (oligopeptide).
 
     0.735
Atu3049
ABC transporter, substrate binding protein (oligopeptide).
 
     0.729
soxA
Sarcosine oxidase alpha subunit.
  
 
 0.729
soxA-2
Sarcosine oxidase alpha subunit.
  
 
 0.729
soxA-3
Sarcosine oxidase alpha subunit.
  
 
 0.729
Atu3051
Agropine synthesis reductase.
 
     0.692
Atu3050
Putative AgaE.
 
     0.642
Atu3045
Hypothetical protein.
  
    0.592
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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