STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3046Oxidoreductase. (441 aa)    
Predicted Functional Partners:
Atu3047
ABC transporter, membrane spanning protein (oligopeptide).
 
     0.872
Atu3052
Transcriptional regulator, MarR family.
 
     0.780
Atu3048
ABC transporter, membrane spanning protein (oligopeptide).
 
     0.766
Atu3049
ABC transporter, substrate binding protein (oligopeptide).
 
     0.733
soxA
Sarcosine oxidase alpha subunit.
  
 
 0.707
soxA-2
Sarcosine oxidase alpha subunit.
  
 
 0.707
soxA-3
Sarcosine oxidase alpha subunit.
  
 
 0.707
Atu3051
Agropine synthesis reductase.
 
     0.692
Atu3050
Putative AgaE.
 
     0.645
Atu3045
Hypothetical protein.
  
    0.604
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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