STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3047ABC transporter, membrane spanning protein (oligopeptide). (296 aa)    
Predicted Functional Partners:
Atu3048
ABC transporter, membrane spanning protein (oligopeptide).
    0.941
Atu3049
ABC transporter, substrate binding protein (oligopeptide).
   0.885
Atu3046
Oxidoreductase.
 
    0.833
nikB
ABC transporter, membrane spanning protein.
 
    0.815
Atu4524
ABC transporter, membrane spanning protein (oligopeptide).
 
    0.812
Atu3213
ABC transporter, membrane spanning protein (oligopeptide).
 
    0.811
dppB-2
ABC transporter, membrane spanning protein (peptide).
 
    0.811
Atu3268
ABC transporter, membrane spanning protein (dipeptide).
 
    0.810
Atu3434
ABC transporter, membrane spanning protein (oligopeptide).
 
    0.806
Atu4439
ABC transporter, membrane spanning protein (oligopeptide).
 
    0.803
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.