Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3047ABC transporter, membrane spanning protein (oligopeptide). (296 aa)    
Predicted Functional Partners:
Atu3048
ABC transporter, membrane spanning protein (oligopeptide).
 
 
 0.968
Atu3049
ABC transporter, substrate binding protein (oligopeptide).
 
   0.896
Atu3046
Oxidoreductase.
 
     0.872
nikB
ABC transporter, membrane spanning protein.
  
   0.848
Atu4524
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.846
Atu3213
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.844
Atu3268
ABC transporter, membrane spanning protein (dipeptide).
  
   0.844
dppB-2
ABC transporter, membrane spanning protein (peptide).
  
   0.844
Atu3434
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.841
Atu4439
ABC transporter, membrane spanning protein (oligopeptide).
  
   0.838
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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