STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3062Transcriptional regulator, LacI family. (342 aa)    
Predicted Functional Partners:
Atu3063
ABC transporter, nucleotide binding/ATPase protein.
 
    0.769
Atu3065
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
    0.738
Atu3064
ABC transporter, nucleotide binding/ATPase protein.
  
    0.689
Atu3066
Resiniferatoxin-binding, phosphotriesterase-related protein.
       0.665
Atu3067
Conserved hypothetical protein.
 
     0.663
gltB
Glutamate synthase large subunit.
    
 
 0.587
gltB-2
Glutamate synthase large subunit.
    
 
 0.587
Atu3061
GGDEF family protein.
      0.426
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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