Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
Atu3062Transcriptional regulator, LacI family. (342 aa)    
Predicted Functional Partners:
Atu3063
ABC transporter, nucleotide binding/ATPase protein.
 
    0.774
Atu3065
ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
    0.743
gltB
Glutamate synthase large subunit.
    
 
 0.694
gltB-2
Glutamate synthase large subunit.
    
 
 0.694
Atu3064
ABC transporter, nucleotide binding/ATPase protein.
  
    0.692
Atu3066
Resiniferatoxin-binding, phosphotriesterase-related protein.
       0.666
Atu3067
Conserved hypothetical protein.
 
     0.662
ptsH
Phosphocarrier protein HPr.
   
 
 0.454
Atu3061
GGDEF family protein.
       0.426
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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