STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3065ABC transporter, membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family. (334 aa)    
Predicted Functional Partners:
Atu3063
ABC transporter, nucleotide binding/ATPase protein.
   0.965
Atu3064
ABC transporter, nucleotide binding/ATPase protein.
   0.959
Atu3066
Resiniferatoxin-binding, phosphotriesterase-related protein.
 
     0.841
rbsB-3
ABC transporter, substrate binding protein (ribose).
 
   0.829
rbsB
ABC transporter, substrate binding protein (ribose).
 
   0.817
rbsB-4
ABC transporter, substrate binding protein (ribose).
 
   0.798
Atu3067
Conserved hypothetical protein.
 
     0.784
Atu4552
ABC transporter, substrate binding protein.
 
   0.764
Atu4745
ABC transporter, nucleotide binding/ATPase protein (sugar).
 
   0.755
rbsB-2
ABC transporter, substrate binding protein (ribose).
 
   0.752
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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