Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3087ABC transporter, membrane spanning protein (spermidine/putrescine). (303 aa)    
Predicted Functional Partners:
Atu3086
ABC transporter, membrane spanning protein (spermidine/putrescine).
 
 0.998
hyuA2
Hydantoin Racemase.
 
     0.936
Atu3088
ABC transporter, substrate binding protein (spermidine/putrescine).
 
  
 0.929
Atu3089
ABC transporter, nucleotide binding/ATPase protein (spermidine/putrescine); Belongs to the ABC transporter superfamily.
 
 
 0.920
Atu4423
ABC transporter, membrane spanning protein.
 
 
 0.908
Atu0612
ABC transporter, membrane spanning protein.
 
 
 0.894
Atu4245
ABC transporter, membrane spanning protein (polyamine).
 
 
 0.864
potF
ABC transporter, substrate binding protein (putrescine); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
  
 0.834
Atu4421
ABC transporter, substrate binding protein (spermidine/putrescine).
 
  
 0.825
potG
ABC transporter, nucleotide binding/ATPase protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.796
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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