STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3088ABC transporter, substrate binding protein (spermidine/putrescine). (429 aa)    
Predicted Functional Partners:
Atu3089
ABC transporter, nucleotide binding/ATPase protein (spermidine/putrescine); Belongs to the ABC transporter superfamily.
 
 
 0.993
Atu3086
ABC transporter, membrane spanning protein (spermidine/putrescine).
 
  
 0.928
Atu3087
ABC transporter, membrane spanning protein (spermidine/putrescine).
 
  
 0.927
hyuA2
Hydantoin Racemase.
 
     0.751
Atu4423
ABC transporter, membrane spanning protein.
 
  
 0.581
Atu4422
ABC transporter, membrane spanning protein (spermidine/putrescine).
 
  
 0.570
Atu4421
ABC transporter, substrate binding protein (spermidine/putrescine).
  
     0.534
potB
ABC transporter, membrane spanning protein.
  
  
 0.496
Atu4244
ABC transporter, membrane spanning protein (polyamine).
  
  
 0.496
Atu0612
ABC transporter, membrane spanning protein.
  
  
 0.495
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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