STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu3112ABC transporter, membrane spanning protein (sugar). (291 aa)    
Predicted Functional Partners:
Atu3113
ABC transporter, membrane spanning protein (sugar).
 
  0.996
Atu3114
ABC transporter, substrate binding protein (sugar).
 
   0.934
Atu3133
ABC transporter, membrane spanning protein (sugar).
 
   0.858
Atu3106
ABC transporter, substrate binding protein (sugar).
 
   0.844
Atu4251
ABC transporter, membrane spanning protein (sugar).
 
   0.840
Atu3150
ABC transporter, membrane spanning protein (sugar).
 
   0.836
Atu3238
ABC transporter, membrane spanning protein (sugar).
 
   0.833
Atu3101
ABC transporter, membrane spanning protein (sugar).
 
   0.822
Atu1403
ABC transporter, membrane spanning protein.
 
   0.821
Atu0392
ABC transporter, membrane spanning protein.
 
   0.813
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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