STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3114ABC transporter, substrate binding protein (sugar). (429 aa)    
Predicted Functional Partners:
Atu3112
ABC transporter, membrane spanning protein (sugar).
 
   0.933
Atu3113
ABC transporter, membrane spanning protein (sugar).
 
   0.930
Atu3133
ABC transporter, membrane spanning protein (sugar).
 
   0.820
Atu3132
ABC transporter, membrane spanning protein (sugar).
 
   0.813
Atu3119
Conserved hypothetical protein.
 
     0.804
Atu3118
Conserved hypothetical protein.
 
    0.645
Atu3116
Oxidoreductase.
 
     0.644
Atu3111
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
  
   0.622
Atu3117
Conserved hypothetical protein.
 
     0.620
Atu3115
Transcriptional regulator, TetR family.
 
     0.611
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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