STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu3116Oxidoreductase. (373 aa)    
Predicted Functional Partners:
Atu3117
Conserved hypothetical protein.
 
    0.949
Atu3118
Conserved hypothetical protein.
 
  
 0.946
Atu3119
Conserved hypothetical protein.
 
     0.851
Atu3110
Hypothetical protein.
  
    0.713
Atu3027
Dehydrogenase.
 
     0.667
Atu3114
ABC transporter, substrate binding protein (sugar).
 
     0.644
Atu3109
2-hydroxyacid-family dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
     0.643
Atu3028
Conserved hypothetical protein.
  
    0.639
Atu3106
ABC transporter, substrate binding protein (sugar).
  
     0.588
Atu3115
Transcriptional regulator, TetR family.
 
     0.572
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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