Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3133ABC transporter, membrane spanning protein (sugar). (293 aa)    
Predicted Functional Partners:
Atu3132
ABC transporter, membrane spanning protein (sugar).
 
  0.996
Atu3130
ABC transporter, substrate binding protein (sugar).
 
  0.988
Atu3131
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
 
  0.977
Atu3112
ABC transporter, membrane spanning protein (sugar).
 
   0.858
Atu4250
ABC transporter, membrane spanning protein (sugar).
 
   0.840
Atu3114
ABC transporter, substrate binding protein (sugar).
 
   0.831
Atu0393
ABC transporter, membrane spanning protein.
 
   0.825
Atu3106
ABC transporter, substrate binding protein (sugar).
 
   0.824
Atu4557
ABC transporter, membrane spanning protein (sugar).
 
   0.824
Atu3023
ABC transporter, membrane spanning protein (sugar).
  
   0.822
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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