Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu3136ABC transporter, membrane spanning protein. (173 aa)    
Predicted Functional Partners:
Atu3135
ABC transporter, membrane spanning protein.
 
 0.998
Atu3261
ABC transporter, membrane spanning protein.
 
 0.971
Atu2742
Conserved hypothetical protein.
  
  
  0.964
Atu4827
ABC transporter, membrane spanning protein.
 
 0.960
Atu3137
C4-dicarboxylate-binding protein.
 
  
 0.940
Atu3254
ABC transporter, nucleotide binding/ATPase protein (dicarboxylate).
  
  
 
0.920
Atu3157
ABC transporter, membrane spanning protein.
  
  
  0.914
Atu3366
Tripartite ATP-independent periplasmic transporter, DctQ component.
   
 
  0.900
Atu3255
ABC transporter, membrane spanning protein (dicarboxylate).
 
 
 0.823
Atu3253
ABC transporter, substrate binding protein.
 
  
 0.805
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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